3260 papers • 126 benchmarks • 313 datasets
Chemical Entity Recognition (CER) is a fundamental task in biomedical text mining and Natural Language Processing (NLP). It involves the identification and classification of chemical entities in textual data, such as scientific literature. These entities can encompass a broad range of concepts including chemical compounds, drugs, elements, ions or functional groups. Given the complexity and variety of chemical nomenclature, the CER task represents a significant challenge for LLMs, and their performance in this task can provide important insights into their overall capabilities in the biomedical domain.
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Through extensive instruction tuning experiments on LLMs, the effectiveness of Mol-Instructions is demonstrated in enhancing large models' performance in the intricate realm of biomolecular studies, thus fostering progress in the biomolescular research community.
The proposed Chem-FINESE has two components: a seq2seq entity extractor to extract named entities from the input sentence and a seq2seq self-validation module to reconstruct the original input sentence from extracted entities.
Adding a benchmark result helps the community track progress.