3260 papers • 126 benchmarks • 313 datasets
Retrosynthetic analysis is a pivotal synthetic methodology in organic chemistry that employs a reverse-engineering approach, initiating from the target compound and retroactively tracing potential synthesis routes and precursor molecules. This technique proves instrumental in sculpting efficient synthetic strategies for intricate molecules, thus catalyzing the evolution and progression of novel pharmaceuticals and materials.
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This paper introduces a graph-based approach that capitalizes on the idea that the graph topology of precursor molecules is largely unaltered during a chemical reaction, outperforming previous template-free and semi-template-based methods.
This work proposes a new molecule generation model that can generate diverse, valid and unique molecules due to the useful inductive biases of modeling reactions, and allows chemists to interrogate not only the properties of the generated molecules but also the feasibility of the synthesis routes.
A template-free self-corrected retrosynthesis predictor (SCROP) to perform a retroSynthesis prediction task trained by using the Transformer neural network architecture, which shows an accuracy 1.7 times higher than other state-of-the-art methods for compounds not appearing in the training set.
The Conditional Graph Logic Network is proposed, a conditional graphical model built upon graph neural networks that learns when rules from reaction templates should be applied, implicitly considering whether the resulting reaction would be both chemically feasible and strategic.
It is demonstrated that applying augmentation techniques to the SMILE representation of target data significantly improves the quality of the reaction predictions.
This study aimed to discover synthetic routes backwardly from a given desired molecule to commercially available compounds by inversion of the forward model into the backward one via Bayes' law of conditional probability.
It is argued that representing the reaction as a sequence of edits enables MEGAN to efficiently explore the space of plausible chemical reactions, maintaining the flexibility of modeling the reaction in an end-to-end fashion and achieving state-of-the-art accuracy in standard benchmarks.
A novel template-free algorithm for automatic retrosynthetic expansion inspired by how chemists approach Retrosynthesis prediction is devised, outperforming the state-of-the-art baselines by a significant margin and provides chemically reasonable interpretation.
This study model single-step retrosynthesis in a template-based approach using modern Hopfield networks (MHNs) to associate different modalities, reaction templates and molecules, which allows the model to leverage structural information about reaction templates.
This work proposes to leverage both the representations and design a new pre-training algorithm, dual-view molecule pre- training (briefly, DMP), that can effectively combine the strengths of both types of molecule representations.
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