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Pubmed Dataset - Papersgraph

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Pubmed

Introduced in Collective Classification in Network Data2007

About this Dataset

The PubMed dataset consists of 19717 scientific publications from PubMed database pertaining to diabetes classified into one of three classes. The citation network consists of 44338 links. Each publication in the dataset is described by a TF/IDF weighted word vector from a dictionary which consists of 500 unique words.

Source: https://linqs.soe.ucsc.edu/data

Source: Collective Classification in Network Data

Dataset Variants

PubMed-Long ValPubMed-Long TestPubmed: fixed 20 node per class PubMed CentralPubMed (60%/20%/20% random splits)PubMed (48%/32%/20% fixed splits)keyword_pubmed_datasetenoriega/keyword_pubmed sentencePubmed (weighted evaluation)Pubmed random partitionPubmed (nonstandard variant)Pubmed (biased evaluation)PubMed 20k RCTPubmed Full-supervisedPubmedPubMed with Public Split: fixed 20 nodes per classPubMed (0.1%)PubMed (0.05%)PubMed (0.03%)

Papers1

Collective Classification in Network Data

This article introduces four of the most widely used inference algorithms for classifying networked data and empirically compare them on both synthetic and real-world data.

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