GraphsBiology

PROTEINS

Introduced in Protein function prediction via graph kernels2004

About this Dataset

PROTEINS is a dataset of proteins that are classified as enzymes or non-enzymes. Nodes represent the amino acids and two nodes are connected by an edge if they are less than 6 Angstroms apart.

Source: Fast and Deep Graph Neural Networks

Source: Protein function prediction via graph kernels

Dataset Variants

PROTEINS

Papers1

Protein function prediction via graph kernels

A new approach that combines sequential, structural and chemical information into one graph model of proteins, derivable from protein sequence and structure only, is competitive with vector models that require additional protein information, such as the size of surface pockets.

Dataset Loaders

EDIT

🔥

dmlc/dgl

pytorchtfmxnet

📦

danielegrattarola/spektral

tf

Tasks

EDIT

Graph Classification

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