Research Connect
Research PapersAboutContact

MONAI: An open-source framework for deep learning in healthcare

Published in arXiv.org (2022-11-04)
aionlincourseaionlincourseaionlincourseaionlincourseaionlincourseaionlincourse
Generate GraphDownload

On This Page

  • TL;DR
  • Abstract
  • Authors
  • Datasets
  • References
TL

TL;DR

MONAI extends PyTorch to support medical data, with a particular focus on imaging, and provide purpose-specific AI model architectures, transformations and utilities that streamline the development and deployment of medical AI models.

Abstract

Artificial Intelligence (AI) is having a tremendous impact across most areas of science. Applications of AI in healthcare have the potential to improve our ability to detect, diagnose, prognose, and intervene on human disease. For AI models to be used clinically, they need to be made safe, reproducible and robust, and the underlying software framework must be aware of the particularities (e.g. geometry, physiology, physics) of medical data being processed. This work introduces MONAI, a freely available, community-supported, and consortium-led PyTorch-based framework for deep learning in healthcare. MONAI extends PyTorch to support medical data, with a particular focus on imaging, and provide purpose-specific AI model architectures, transformations and utilities that streamline the development and deployment of medical AI models. MONAI follows best practices for software-development, providing an easy-to-use, robust, well-documented, and well-tested software framework. MONAI preserves the simple, additive, and compositional approach of its underlying PyTorch libraries. MONAI is being used by and receiving contributions from research, clinical and industrial teams from around the world, who are pursuing applications spanning nearly every aspect of healthcare.

Authors

M. Cardoso

1 Paper

Wenqi Li

1 Paper

Richard Brown

1 Paper

References39 items

1

PyTorch: An Imperative Style, High-Performance Deep Learning Library

Computer ScienceMathematics
2

MXNet: A Flexible and Efficient Machine Learning Library for Heterogeneous Distributed Systems

Computer Science
3

This Paper Is Included in the Proceedings of the 12th Usenix Symposium on Operating Systems Design and Implementation (osdi '16). Tensorflow: a System for Large-scale Machine Learning Tensorflow: a System for Large-scale Machine Learning

Computer Science
4

Research Impact

343

Citations

39

References

0

Datasets

56

Nic Ma

1 Paper

E. Kerfoot

1 Paper

Yiheng Wang

1 Paper

Benjamin Murrey

1 Paper

A. Myronenko

1 Paper

Can Zhao

1 Paper

Dong Yang

1 Paper

V. Nath

1 Paper

Yufan He

1 Paper

Ziyue Xu

1 Paper

Ali Hatamizadeh

1 Paper

Wenjie Zhu

1 Paper

Yun Liu

2 Papers

Mingxin Zheng

1 Paper

Yucheng Tang

1 Paper

Isaac Yang

1 Paper

Michael Zephyr

1 Paper

Behrooz Hashemian

1 Paper

Sachidanand Alle

1 Paper

Mohammad Zalbagi Darestani

1 Paper

C. Budd

1 Paper

M. Modat

1 Paper

Tom Kamiel Magda Vercauteren

1 Paper

Guotai Wang

1 Paper

Yiwen Li

1 Paper

Yipeng Hu

1 Paper

Yunguan Fu

1 Paper

Benjamin L. Gorman

1 Paper

Hans J. Johnson

1 Paper

Brad W. Genereaux

1 Paper

B. S. Erdal

1 Paper

Vikash Gupta

1 Paper

A. Diaz-Pinto

1 Paper

Andre Dourson

1 Paper

L. Maier-Hein

1 Paper

P. Jaeger

2 Papers

M. Baumgartner

1 Paper

Jayashree Kalpathy-Cramer

1 Paper

Mona G. Flores

1 Paper

J. Kirby

1 Paper

L. Cooper

1 Paper

H. Roth

1 Paper

Daguang Xu

1 Paper

David Bericat

1 Paper

R. Floca

1 Paper

S. K. Zhou

1 Paper

Haris Shuaib

1 Paper

K. Farahani

1 Paper

K. Maier-Hein

1 Paper

S. Aylward

1 Paper

Prerna Dogra

1 Paper

S. Ourselin

1 Paper

Andrew Feng

1 Paper

U-Net: Convolutional Networks for Biomedical Image Segmentation

5

Delving Deep into Rectifiers: Surpassing Human-Level Performance on ImageNet Classification

6

TensorFlow: Large-Scale Machine Learning on Heterogeneous Distributed Systems

Computer Science
7

Grad-CAM: Visual Explanations from Deep Networks via Gradient-Based Localization

8

Visualizing and Understanding Convolutional Networks

9

batchgenerators - a python framework for data augmentation

10

Gaussian Error Linear Units (GELUs)

11

MONAI Label: A framework for AI-assisted Interactive Labeling of 3D Medical Images

12

python-pillow/Pillow: 8.4.0

13

The Medical Segmentation Decathlon

14

Common Limitations of Image Processing Metrics: A Picture Story

15

DeepReg: a deep learning toolkit for medical image registration

16

Multi-domain Clinical Natural Language Processing with MedCAT: the Medical Concept Annotation Toolkit

17

TorchIO: A Python library for efficient loading, preprocessing, augmentation and patch-based sampling of medical images in deep learning

18

Artificial intelligence outperforms human students in conducting neurosurgical audits

19

Kornia: an Open Source Differentiable Computer Vision Library for PyTorch

20

The “inconvenient truth” about AI in healthcare

21

Predicting scheduled hospital attendance with artificial intelligence

22

DeepNeuro: an open-source deep learning toolbox for neuroimaging

23

Aleatoric uncertainty estimation with test-time augmentation for medical image segmentation with convolutional neural networks

24

DLTK: State of the Art Reference Implementations for Deep Learning on Medical Images

25

NiftyNet: a deep-learning platform for medical imaging

26

Generalised Dice overlap as a deep learning loss function for highly unbalanced segmentations

27

SmoothGrad: removing noise by adding noise

28

Self-Normalizing Neural Networks

29

ITK: enabling reproducible research and open science

30

Metrics reloaded: Pitfalls and recommendations for image analysis validation

31

Tensorboardplugin3d: 3d tensor visualization. https://github.com/KitwareMedical/ tensorboard-plugin-3d (2022)

32

cuCIM - A GPU image I/O and processing library

33

Phoenixdl/rising: Highperformance differentiable medical data augmentation

34

URL https://doi.org/10.5281/ zenodo.4295521

35

The state of machine learning frameworks in 2019. The Gradient

36

Smooth-grad

37

) Computer Vision -ECCV

38

Mnist handwritten digit database

39

Tensorboardplu-gin3d: 3d tensor visualization

Authors

Field of Study

Computer Science

Journal Information

Name

ArXiv

Volume

abs/2211.02701

Venue Information

Name

arXiv.org

Type

URL

https://arxiv.org

Alternate Names

  • ArXiv